PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25965-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 89aa    MW: 9941.34 Da    PI: 10.6548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25965-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.11.1e-1417681162
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                      +NR++A+  R+RKka++ eLe kvk Le+ N++L ++l++l++e + l++ 
  TRIUR3_25965-P1 17 LRNRVSAQQARERKKAYMGELEAKVKDLETRNSELEERLSTLQNENQMLRQI 68
                     69*********************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-12671IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-141569No hitNo description
CDDcd147045.65E-141663No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-181671No hitNo description
PfamPF001704.1E-131769IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0241872IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDLIQARLPI LLVHILLRNR VSAQQARERK KAYMGELEAK VKDLETRNSE LEERLSTLQN  60
ENQMLRQILK NTTGNRRGPG GSGGAGGDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-163271342Transcription factor HY5
2oqq_B3e-163271342Transcription factor HY5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3756943e-86AK375694.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3101I12.
GenBankAK3633003e-86AK363300.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2014C16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687403.12e-34PREDICTED: transcription factor HY5-like
RefseqXP_013609113.12e-34PREDICTED: transcription factor HY5
SwissprotO246463e-31HY5_ARATH; Transcription factor HY5
TrEMBLM8A8J36e-58M8A8J3_TRIUA; Transcription factor HY5
STRINGBra008976.1-P9e-34(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.11e-29bZIP family protein