PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23651-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 327aa    MW: 35254.9 Da    PI: 5.266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23651-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11159201754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+ +Pk +      K++  ++L  +++Y+k+L
  TRIUR3_23651-P1 159 MAERRRRKRLNDRLSMLRSTVPKiS------KMDRTATLGDTIDYVKEL 201
                      79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.392152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-15156222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-12158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8159201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14159222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDPLDEESFL EELMPLHREE APAPPYPGNN SIMTISDLLF YGGGKGCTAE ERSGPFQQPM  60
LPSPPAVRPH PHQEYNFNYL SEVCNPWRSC IPDPPAVVQA AAGKAPLTLP LHDAIASSST  120
FVFGGGAGES SGMRSMPASG THPESKLNAG SGTPSKNLMA ERRRRKRLND RLSMLRSTVP  180
KISKMDRTAT LGDTIDYVKE LTKRIKTVEE EMGTTPEELN LLKNFSSGGN EETPTRSSTK  240
LCANIENQGG GDTKIEICCS TNPGALIATV TALDVLGLEI EQCVVSCFSD FAMQASCSQA  300
EGKRQVISTD EIKQALLRSA GYGARCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160167ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150230.11e-129transcription factor bHLH61-like
SwissprotQ9LSL14e-53BH093_ARATH; Transcription factor bHLH93
TrEMBLM7Z7H40.0M7Z7H4_TRIUA; Transcription factor bHLH93
STRINGTRIUR3_23651-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-55beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]