PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22176-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 484aa    MW: 52000.1 Da    PI: 6.7529
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22176-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-11268324155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  TRIUR3_22176-P1 268 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGKQ-GGYDKEDKAARAYDLAALKYWG 324
                      57*******************5544.2354448877.6699999*************98 PP

2AP252.11.7e-16367418155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  TRIUR3_22176-P1 367 SKYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFTTEEEAAEAYDIAAIKFRG 418
                      89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.87E-16268334No hitNo description
SuperFamilySSF541713.53E-13268334IPR016177DNA-binding domain
PfamPF008472.3E-8268324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-10269332IPR001471AP2/ERF domain
PROSITE profilePS5103216.239269332IPR001471AP2/ERF domain
SMARTSM003802.1E-20269338IPR001471AP2/ERF domain
PRINTSPR003672.0E-6270281IPR001471AP2/ERF domain
CDDcd000181.69E-23367428No hitNo description
SuperFamilySSF541714.97E-18367428IPR016177DNA-binding domain
PfamPF008473.1E-10367418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18368427IPR001471AP2/ERF domain
PROSITE profilePS5103219.493368426IPR001471AP2/ERF domain
SMARTSM003803.7E-31368432IPR001471AP2/ERF domain
PRINTSPR003672.0E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MASANNWLGF SLSGQGSHPQ PHQNGSPAAA AIDGDFYGLQ AQTAPDAHLG MSSLRADANY  60
GVMDAFNGGT QETQDWAMRG LDYHGGSSEL SMLVGSSGGR MTVDDGEAPK LEDFLGGNSF  120
SDAQDHAGSY LFSSGSAMGS GAASGSHGVD GRGGSTIELS MIKTWLRNDN NEAQHDQEMS  180
ADASATSYAC SGAPGSTSNG VGVASSRGQG LALSMSMGSN SHPQMPVVPA AVGTESTSSE  240
NKRVDSPSAG TADAVQRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG  300
KQGGYDKEDK AARAYDLAAL KYWGTTTTTN IPISTYEKEI EEMKHMTRQE YIAYLRRNSS  360
GFSRGASKYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFT TEEEAAEAYD IAAIKFRGLN  420
AVTNFEMSRY DVKSILEGST LPTCMLPCMH FTAKSNSASE RLKSIELSTG QCTIFANVQK  480
QFDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640300.0AK364030.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196244.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-122BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM7ZML50.0M7ZML5_TRIUA; AP2-like ethylene-responsive transcription factor BBM2
STRINGTRIUR3_22176-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-111AP2 family protein