PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19131-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Whirly
Protein Properties Length: 364aa    MW: 40028.1 Da    PI: 9.6161
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19131-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly127.28.9e-40711922139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++ +++p f++++sg  +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s    + +a  
  TRIUR3_19131-P1  71 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSST---LYRA-- 159
                      9********************************************************************************9985...5554.. PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                               + ++ls+t s  k+ne++svPv+kaefav+r++l+
  TRIUR3_19131-P1 160 ---------IIFSLSTTIS--KTNERLSVPVTKAEFAVMRTALS 192
                      .........5789999988..9*******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.1E-5558212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-5464233IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.0E-4071189IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKTYDYINRV VLTLPLPVYE GLTLSMKIGR GVTDLKDVLW SGSLTFKHAL STSAANVDEN  60
ASVKKYASYT VFKGKAALSI SPILPLFTKV ESGGSRVDRN GSVMLTFFPA VGQRKYDYTK  120
KQLFALSPTE VGSLISLGPA ESCEFFHDPS MKSSTLYRAI IFSLSTTISK TNERLSVPVT  180
KAEFAVMRTA LSFALPHIMG WDQALSTHPQ STSTSASKPR FERPNPASEW DRELSDFMVP  240
KEIEVRMKST MKPLVSVQCT YRFMANVYSR LSYNLRLMSS VAVQSCGLCK EPQRTRTGYT  300
QRIGYNPAET NPCSVMIPDT TFLSSTTGRN CTGEGGDSIF SMASTAIASA VIVLGFLKEV  360
KQAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_D3e-586620812169Single-stranded DNA-binding protein WHY2, mit
4kop_C3e-586620812169Single-stranded DNA-binding protein WHY2, mit
4kop_B3e-586620812169Single-stranded DNA-binding protein WHY2, mit
4kop_A3e-586620812169Single-stranded DNA-binding protein WHY2, mit
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499761e-163AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574931.11e-113PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLM7ZQD60.0M7ZQD6_TRIUA; Uncharacterized protein
STRINGBRADI3G04450.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.18e-60WHIRLY 2