PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17375-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 216aa    MW: 24447 Da    PI: 4.919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17375-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-1053921054
                     HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     rrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  TRIUR3_17375-P1 53 RRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 92
                     9*******************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9254392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-84998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1453113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-75392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1453105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.84E-65997No hitNo description
CDDcd048732.16E-5144184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAT AAWECNAMGD FFSPACAGAA AMDCFPERHQ PTRRRRKRLN  60
DRLSMLRSVV PKISKMDRTS ILGDTIDYMK ELLERIRRLQ EEMEEPHAGP AAAPLLSVFR  120
ELNPNEMLAR NTPKFEVERK EEDTRVEIYC AAKPGLLLST VSTLDTLGLD IQQCVVSCFN  180
DFAMHASCSE MQREMISADA IKQELFKNAG YGGGCL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3563490.0AK356349.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033I10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154444.11e-104transcription factor ABORTED MICROSPORES-like
SwissprotQ9LSL12e-67BH093_ARATH; Transcription factor bHLH93
TrEMBLM7ZIK71e-159M7ZIK7_TRIUA; Transcription factor bHLH93
STRINGTRIUR3_17375-P11e-159(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-49beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]