PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16394-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 191aa    MW: 20695.3 Da    PI: 8.3474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16394-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13127172655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  s +++L +Ave+Ik Lq
  TRIUR3_16394-P1 127 SIAERERRTRISDKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 172
                      689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.361121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-16124184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-13125176No hitNo description
Gene3DG3DSA:4.10.280.104.2E-15126184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10127172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKSQLSFTAG GPQIAAHLSR ISEGASLFPG ADVVRTAAHP GGEHPVSRSF SASGSSGGFS  60
IVGPWDESRE IIGTLDLGGY ESQFSGMASS SSLELAGMDK YMQAQQQQDQ VAFKVRAKRG  120
CATHPRSIAE RERRTRISDK LRKLQDLVPN MDKQTSTSDM LDLAVEHIKG LQSQLQAMKH  180
EQDKCTCCNK P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499540.0AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165844.11e-111transcription factor bHLH128-like
SwissprotQ8H1022e-45BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A3B6NRB71e-137A0A3B6NRB7_WHEAT; Uncharacterized protein
TrEMBLA0A446VFV71e-137A0A446VFV7_TRITD; Uncharacterized protein
TrEMBLA0A446VFW21e-137A0A446VFW2_TRITD; Uncharacterized protein
TrEMBLT1MFB71e-139T1MFB7_TRIUA; Uncharacterized protein
STRINGTRIUR3_16394-P11e-140(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]