PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13265-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 614aa    MW: 67084.5 Da    PI: 6.9609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13265-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.6e-13460506455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  TRIUR3_13265-P1 460 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 506
                      799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4956241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.92E-15459510No hitNo description
SuperFamilySSF474591.96E-18459521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18460518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEVEEDGANG GNGGAWTEED RDLSTTVLGR DAFAYLTKGG GTISEGLVAA SSPVDLQNKL  60
QELIESEHPG AGWNYAIFWQ LSRTKSGDLV LGWGDGSCRE PNDAELAVAA SAGNDDAKQR  120
MRKRVLQRLH KAFGGADEED YAPTIGQVTD TEMFFLASMY FAFPRRAGAP GQVFAAGLPL  180
WVPNSERNVF PANYCYRGYL ASTAGFRTIL LVPFETGVLE LGSMQQVAES SDTLQTIKSV  240
FAGTGGNKDI IPSREGNGHI ERSPGLAKIF GKDLNLGRSS AGPVIGVSKV DERPWEQRTA  300
GGGSSLLPNV QKGLQSFTWS QARGLNSHQQ KFGNGILIVS NEATHGNNRT ADSSTTTQFQ  360
LQKAPQLQKL PLLQKPPQLV KPLQMVNQQQ LQPQAPRQID FSAGTSSKSG VLVTRAAVLD  420
GDSSEVNGLC KEEGTTPVIE DRRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR  480
AVVPNISKMD KASLLGDAIA YITDLQKKLK DMETERERFL ESGMVDPRER APRPEVDIQV  540
VQDEVLVRVM SPLENHPVKK VFEAFEEADV RVGESKLTGN NGTVVHSFII KCPGSEQQTR  600
EKVIAAMSRA MSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-24562419192Transcription factor MYC3
4rs9_A1e-24562419192Transcription factor MYC3
4rqw_B1e-24562419192Transcription factor MYC3
4rqw_A1e-24562419192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441449RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768200.0AK376820.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566142.10.0PREDICTED: transcription factor bHLH13
TrEMBLM7YZC30.0M7YZC3_TRIUA; Transcription factor bHLH13
STRINGMLOC_69470.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.38e-65bHLH family protein