PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12123-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 600aa    MW: 62860.2 Da    PI: 7.1062
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12123-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.3e-11261317155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  TRIUR3_12123-P1 261 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 317
                      57*******************4444.2455535555.779999**************98 PP

2AP2476.6e-15360411155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRIUR3_12123-P1 360 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 411
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-8261317IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14261327IPR016177DNA-binding domain
CDDcd000182.52E-17261327No hitNo description
PROSITE profilePS5103217.28262325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-12262326IPR001471AP2/ERF domain
SMARTSM003801.4E-21262331IPR001471AP2/ERF domain
PRINTSPR003673.5E-6263274IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17360420IPR016177DNA-binding domain
CDDcd000186.52E-23360419No hitNo description
PfamPF008478.1E-10360411IPR001471AP2/ERF domain
PROSITE profilePS5103219.045361419IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18361419IPR001471AP2/ERF domain
SMARTSM003802.4E-33361425IPR001471AP2/ERF domain
PRINTSPR003673.5E-6401421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MATVNNWLGF SLSPQELPPS AAASGDVSGA DVCYNIPQDW NMRGSELSAL VAEPKLEDFL  60
GGISYSDHHH HHKQAGGNNM VVPAGSGSGG AACYTTSGGS SVGYLYHPSS ASLQFADSVM  120
VASSGGGVHH DGAGIMANTT ANGDLNNGSG GGGIGLSMIK SWLRSQPSPA QPPEQQRADA  180
AAQGLSLSMN MAACMPPLVG GERGVPELPI VRKDDTAGGS SAGSGAVVSA GGADSTGGSS  240
GVVVETPASR KTADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQGGYDK  300
EEKAARAYDL AALKYWGATT TTNFPVNNYE KELEEMKHMT RQEFVASLRR KSSGFSRGAS  360
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  420
TRYDVKSILD STALPIGSAA KRLKDAEAAT ASSLALQQQQ HAGVHAQAMQ QQHGGLGSID  480
NAAGASLEHS TGSNSVLYNN GVVESYMLPM STTTTATASH AREQVAAHAD ARAVAAQAYS  540
GGNMSRDHDD GKIAYENYLV STAASGGGRM AAWAQASAPP ATSSSDMTGA QLFSVWNDSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151353.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-130BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM7Z7F30.0M7Z7F3_TRIUA; AP2-like ethylene-responsive transcription factor BBM2
STRINGTRIUR3_12123-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-119AP2 family protein