PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04644-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 370aa    MW: 41387.7 Da    PI: 10.6134
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04644-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.3e-1540100155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse....ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++    ++k+ ++++lg +g +e Aa+a++ a++k++g
  TRIUR3_04644-P1  40 SSYRGVTRHRWTGRFEAHLWDkNTWtepqRKKKgRQVYLGAYGGEEAAARAYDLAALKYWG 100
                      67*******************8777775333446*************************98 PP

2AP230.11.2e-09143177138
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                      s+y+GV +++ +g+W+A+I   +   g +k+ +lg++g 
  TRIUR3_04644-P1 143 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYGI 177
                      89****99**********99966...3.6********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1340100IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1540110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-1441109IPR001471AP2/ERF domain
PROSITE profilePS5103219.53341108IPR001471AP2/ERF domain
SMARTSM003805.2E-2441114IPR001471AP2/ERF domain
PfamPF008479.1E-6143177IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-5143176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-4144175IPR001471AP2/ERF domain
PROSITE profilePS5103210.086144279IPR001471AP2/ERF domain
SMARTSM003806.5E-6144285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-4254280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAKQRRSGAG AGNVASNAVR PKPERTRRSV PRGRPSQRTS SYRGVTRHRW TGRFEAHLWD  60
KNTWTEPQRK KKGRQVYLGA YGGEEAAARA YDLAALKYWG RGTVLNFSLS SYDQELKEME  120
EQSREEYIGS LRRKSTGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL YLGTYGILIE  180
VSGCEKKNLR RDLSMSVDTT GPGAFEGSEL LSPVVDALRP NPKSFEDKMY HKKRNSARYI  240
LNAKADGFGK SRLTQEEATM AYDIAAIEHC GLNAVINFDV SRYIKWHHRC HADDAGGLNT  300
PRCVNDRLQP PQTSPTSHAA SALGPLLKAP RLKEMMERVA ASQISTNSLS SSSCPPSAPP  360
PTTQRRGHQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.14e-89PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLT1LIT90.0T1LIT9_TRIUA; Uncharacterized protein
STRINGOB09G17420.11e-88(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-72AP2 family protein