PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 471aa    MW: 53238.5 Da    PI: 8.7013
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9640genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12185241155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA9640 185 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqARKGKQ-GGYDMEEKAARAYDMAALKYWG 241
                               78*******************87777666558877.66******************98 PP

2AP243.11e-13286335355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GV+++++ grW A+I  +     +k  +lg+f t eeA +a++ a+ k++g
  Tp57577_TGAC_v2_mRNA9640 286 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAGEAYDIAAIKFRG 335
                               9***************988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-14185251IPR016177DNA-binding domain
CDDcd000183.70E-19185249No hitNo description
PfamPF008474.0E-9185241IPR001471AP2/ERF domain
PROSITE profilePS5103217.372186249IPR001471AP2/ERF domain
SMARTSM003802.3E-22186255IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-13186250IPR001471AP2/ERF domain
PRINTSPR003671.3E-6187198IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16284344IPR016177DNA-binding domain
CDDcd000181.12E-23284345No hitNo description
SMARTSM003803.5E-30285349IPR001471AP2/ERF domain
PROSITE profilePS5103218.452285343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-17285343IPR001471AP2/ERF domain
PfamPF008473.3E-8286335IPR001471AP2/ERF domain
PRINTSPR003671.3E-6325345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MKSFENIYDT INLKNQNSNM LGFSVSPQMN ISVPSFAAAA TETVPTSFYY HPTPLHNYGF  60
YYGLEGEHVG LYSPLPINML DGSTYGIEAL SRSQSQEGSM KNQLKDSVQL PNIVEDEVSG  120
LKRWVSRDIH ATNHAQESKY GFTMSPTSQS SCVTSSQQTS LIDSVSTDTM KRKKNQNQTF  180
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQARKGKQG GYDMEEKAAR AYDMAALKYW  240
GPSTRINFPL ENYQKELEEM KKMTRQEYVA HLRRKSSGFS RGASMYRGVT RHHQHGRWQA  300
RIGRVAGNKD LYLGTFTTQE EAGEAYDIAA IKFRGANAVT NFDITKYDVE KIIASNNLLN  360
SEEAKRNRKM DDLINIEEAI NPMQKRCKIQ SFSIGLEEIY NQEVEEYSNR VLHVSNPSSI  420
VTSLCSSREQ SPENRTSLPM LFGMTSTESI SSFSLPQMPL SVFAAWNDAA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511807.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ389141e-119ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLG7K2E70.0G7K2E7_MEDTR; AP2 domain transcription factor, putative
STRINGGLYMA11G04910.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-118AP2 family protein