PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8333
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 117aa    MW: 13168.3 Da    PI: 9.3393
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8333genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26026.61.6e-08892296
                    DUF260  2 CaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86
                              C aCkvl +kC+   C             +  +hk F  + ++k +++ ++++ r+d++++l++eA  r   P++G++g ++ +  q
  Tp57577_TGAC_v2_mRNA8333  8 CPACKVLHKKCKGAdCL------------MLLIHKTFTGNYLTKWMAERNTDQeRRDLITTLAWEASQRKLHPISGSHGAYMVVAGQ 82
                              99999999988743154............4568***********9998865555*************************98887777 PP

                    DUF260 87 leqlkaelal 96
                               e l ++ + 
  Tp57577_TGAC_v2_mRNA8333 83 KEALVNHNNI 92
                              7666655555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031956.3E-7787IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MAVRVEKCPA CKVLHKKCKG ADCLMLLIHK TFTGNYLTKW MAERNTDQER RDLITTLAWE  60
ASQRKLHPIS GSHGAYMVVA GQKEALVNHN NILKNEKAVL QLITQQLEAQ VNEQNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-06LBD family protein