PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 210aa    MW: 24711.6 Da    PI: 11.1884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7790genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-15120156242
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeA 42 
                               +y+GVr+++ +g+W+AeIrdp    +r kr++lg+f taeeA
  Tp57577_TGAC_v2_mRNA7790 120 KYRGVRQRP-WGKWAAEIRDP----IRrKRVWLGTFLTAEEA 156
                               8********.**********7....246*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-19120156IPR001471AP2/ERF domain
PfamPF008472.8E-9120156IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-13120158IPR016177DNA-binding domain
CDDcd000185.03E-20120156No hitNo description
SMARTSM003801.8E-11120163IPR001471AP2/ERF domain
PROSITE profilePS5103216.832120156IPR001471AP2/ERF domain
PRINTSPR003676.5E-10121132IPR001471AP2/ERF domain
PRINTSPR003676.5E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSLQKLKQLK LETPSSVFED DPSIKRKRKP KKKLLRIIIT DHDATDSDSS DEEREKNNQN  60
RTERKGKREI FEINMPLPVL DSSFSFSSRS SSCSSEKTHK KRNRVKKTPP TLAVTLHHNK  120
YRGVRQRPWG KWAAEIRDPI RRKRVWLGTF LTAEEAXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXP TFWLLRRLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA7790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616051.15e-52pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2K3MBE71e-105A0A2K3MBE7_TRIPR; Pathogenesis-related genes transcriptional activator pti6-like protein
STRINGAES990092e-51(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-18cytokinin response factor 4