PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA7063
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 574aa    MW: 63425.2 Da    PI: 6.6771
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA7063genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-16320369355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA7063 320 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 369
                               9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.72E-15178285No hitNo description
SMARTSM003801.2E-18179289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-11179201IPR001471AP2/ERF domain
PROSITE profilePS5103215.053179283IPR001471AP2/ERF domain
PRINTSPR003674.7E-5180191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-11247284IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-8251285IPR016177DNA-binding domain
PRINTSPR003674.7E-5265285IPR001471AP2/ERF domain
CDDcd000181.86E-24318377No hitNo description
SuperFamilySSF541718.5E-18318378IPR016177DNA-binding domain
PROSITE profilePS5103219.164319377IPR001471AP2/ERF domain
SMARTSM003806.8E-32319383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17319377IPR001471AP2/ERF domain
PfamPF008478.0E-11320369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MGSMNTNNWL SFPLSPTHPS SLPPHLQPTQ SQYHHFSLGT LVNDNMLETP FQNHDWNLLS  60
TSHSQSSNEV PKVADFLGVS SKINTENESD LAAFDHSSDN NYLFMPAIHN NSVITTSSNS  120
YDQYQENGNN NLQSLTLSMG SGTTTKDSIC ETSVDTNSTV EAAATPKRAL DTFGQRTSIY  180
RGVTRHRWTG RYEAHLWDNT CRREGQSRKG RQGKCDLCFK LFSISLLRFC SGFGKILILN  240
ILIVFNLINY IMVGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE VEDMKHMTRQ  300
EFVAAIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF GTEEEAAEAY  360
DIAAIKFRGL NAVTNFDMNR YDVKAILESN TLPIGGGAAK RLKEAQALEC SRKREQEMIA  420
LGSSTTFQYG GIGGEGSSSS SRMQLQGYPL MQFEPLYESS IQDPSSFNQQ SYIQTQLQLH  480
QQQQSGGFYN YNGNYNIQNQ QGLMNMGVME NNGGGGGYIG NNNINVGGSG GEEVGFVRVD  540
YDMASGGYGG WSAADASNVG AASVFTMWND LTN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773811e-142EU677381.1 Glycine max PLETHORA 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597448.20.0AP2-like ethylene-responsive transcription factor
SwissprotQ5YGP80.0PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLG7IUD40.0G7IUD4_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA12G06010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-162AP2 family protein