PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5952
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 82aa    MW: 9007.38 Da    PI: 10.8513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5952genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.15e-0939701649
                       AP2 16 vAeIrdpseng.kr.krfslgkfgtaeeAakaaiaa 49
                              +AeIr       ++ +r++lg+f t eeAa+a++ a
  Tp57577_TGAC_v2_mRNA5952 39 RAEIRS----SaRHgARVWLGTFNTIEEAARAYDCA 70
                              599999....33235******************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.4162481IPR001471AP2/ERF domain
SMARTSM003800.00223178IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-103774IPR016177DNA-binding domain
PfamPF008473.5E-63970IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-134074IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
LKVVVIVVCR SRMLPQILSS SDQSAVGDLA RKGHPTNKRA EIRSSARHGA RVWLGTFNTI  60
EEAARAYDCA GFHLNYNVRK I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5952
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-13ERF family protein