PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5921
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 217aa    MW: 24678 Da    PI: 9.0112
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5921genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-1781128353
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                               y+GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+   
  Tp57577_TGAC_v2_mRNA5921  81 YRGVRTRP-WGKYAAEIRDTTRNG--VRVWIGTFDTPEAAALAYDQAAFLT 128
                               9****999.**********54465..*********************9755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-2880139IPR001471AP2/ERF domain
PROSITE profilePS5103221.27280138IPR001471AP2/ERF domain
SMARTSM003805.7E-3280144IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2080139IPR016177DNA-binding domain
PfamPF008472.1E-1181126IPR001471AP2/ERF domain
PRINTSPR003671.2E-98192IPR001471AP2/ERF domain
CDDcd000185.40E-1681140No hitNo description
PRINTSPR003671.2E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDFYSSADLF DISWEEMFFF NNIDSDSSSS SGEMDLQEPR YNITYNGNVK EENPPPPPLV  60
SLAPKTLNPQ PTSFKREKRL YRGVRTRPWG KYAAEIRDTT RNGVRVWIGT FDTPEAAALA  120
YDQAAFLTRG CRAILNFSEH VVKESLQNMN LKTLLNRDSS PLLELKRMHV LRTRSKTCTK  180
KAKRDSKNGV LKNAQNVLVL EDMGSEYLEQ LLMSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2481137359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2481137662ATERF1
3gcc_A1e-2481137662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449887.11e-113ethylene-responsive transcription factor 1B
TrEMBLA0A2K3L7G01e-137A0A2K3L7G0_TRIPR; Ethylene-responsive transcription factor 1b-like protein
STRINGXP_004493869.13e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-36ethylene response factor 1