PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5629
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 504aa    MW: 55093.1 Da    PI: 8.4298
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5629genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-11151207155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA5629 151 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 207
                               57*******************5444.2455536655.779999**************98 PP

2AP247.35.2e-15250301155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA5629 250 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 301
                               57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-15151217IPR016177DNA-binding domain
PfamPF008473.6E-9151207IPR001471AP2/ERF domain
CDDcd000181.62E-19151217No hitNo description
Gene3DG3DSA:3.30.730.102.1E-12152216IPR001471AP2/ERF domain
SMARTSM003804.1E-23152221IPR001471AP2/ERF domain
PROSITE profilePS5103217.477152215IPR001471AP2/ERF domain
PRINTSPR003672.1E-6153164IPR001471AP2/ERF domain
CDDcd000186.83E-25250311No hitNo description
PfamPF008476.4E-10250301IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18250311IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-18251310IPR001471AP2/ERF domain
SMARTSM003801.5E-33251315IPR001471AP2/ERF domain
PROSITE profilePS5103219.045251309IPR001471AP2/ERF domain
PRINTSPR003672.1E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDSSSSSPPT NTNNTSLAFS LSNTIIPSHS SSSSLFHSFT TFPSSTPQPL TLTGSNAVNT  60
SPDATDGGTT NLSIFTGGHK FEDFLGSTVT TTTATTCAPT QLHQFSTDLY DSELKKTISA  120
CFQGGYPAEP NSEPRKLSPK KTVDNFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS  180
RKGRQGGYDK EEKAARAYDL AALKYWGPTT TTNFPISNYE KELDDMKNMT RQEFVASLRR  240
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  300
GLNAVTNFDM SRYDVKSIAN SSLPIGGLSN KNNKISTDSS VSEIKRLEPI QSDERDHPSS  360
VSSTTTLSFA IPIKQDPSSD YWSNILGFHN TSNNNNNSSV VTTTPFNMDF STHASDNHDA  420
TFFSGSGILN VHQQNGNGNN SSSSASSSTS NSIPYATPIF SLNSNSNSNS SYDQNGNNWI  480
GHTIFQTHAK QPSLFQTPIF GME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610101.20.0AP2-like ethylene-responsive transcription factor
SwissprotQ6PQQ31e-149AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLG7JVD90.0G7JVD9_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA13G00950.10.0(Glycine max)
STRINGGLYMA17G07010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-137AINTEGUMENTA-like 5