PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 169aa    MW: 18182.1 Da    PI: 8.6604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4711genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260798e-254107199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+ lrr+C+++C++ p++     p++q + + +++k++G++ +l+ll+++ +++  ++++sl+yeA  r+ +P +Ga+g++
  Tp57577_TGAC_v2_mRNA4711   4 SCNGCRALRRGCSENCIIKPCLewircPETQGRVTLFLAKFYGRTGLLNLLANATNKNSIAVFKSLLYEASGRLANPTHGALGLL 88 
                               6*************************9********************************************************** PP

                    DUF260  81 lklqqqleqlkaelallke 99 
                               l++++  +++++e++l+++
  Tp57577_TGAC_v2_mRNA4711  89 LTGEWSRCEAAVEAVLTGS 107
                               *************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.3023109IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-204104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRSSCNGCRA LRRGCSENCI IKPCLEWIRC PETQGRVTLF LAKFYGRTGL LNLLANATNK  60
NSIAVFKSLL YEASGRLANP THGALGLLLT GEWSRCEAAV EAVLTGSNIN VVTVVDGQTS  120
PCTRIVLKSD LENGNMKTAE ASSVPLILKT IYSHARASLF FLLDLVCS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470179.13e-63LOB domain protein
SwissprotQ9ZW962e-45LBD40_ARATH; LOB domain-containing protein 40
TrEMBLG7ZZB83e-63G7ZZB8_MEDTR; LOB domain protein
STRINGGLYMA20G24950.12e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-42LOB domain-containing protein 40