PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 432aa    MW: 49313.9 Da    PI: 9.576
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4438genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.3e-0863120255
                       AP2   2 gykGV..rwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +++G    +++++gr++A+++d  s+n   k+k  + g ++ +  Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA4438  63 RFRGLnlNRHRWTGRYEAHLWDkLSWNMtqKKKGKQ-GAYDDEISAARAYDLAALKYWG 120
                               566666679*************88888784446666.99***99*************98 PP

2AP226.71.4e-08185218137
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  Tp57577_TGAC_v2_mRNA4438 185 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYS 218
                               89****99**********99966...3.6*******95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.80E-1362130No hitNo description
SMARTSM003805.7E-1263134IPR001471AP2/ERF domain
PROSITE profilePS5103216.58163128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-964129IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1170130IPR016177DNA-binding domain
CDDcd000182.03E-16185293No hitNo description
PfamPF008471.2E-4185217IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-5185219IPR016177DNA-binding domain
SMARTSM003803.3E-10186297IPR001471AP2/ERF domain
PROSITE profilePS5103213.393186291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-4186219IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-5266293IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-7266292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MIIKTEENKR RKFISMADDD FQVIGKRRRR EPTVAALTSE DNQGQNQQVC QNSTTTTTKR  60
SSRFRGLNLN RHRWTGRYEA HLWDKLSWNM TQKKKGKQGA YDDEISAARA YDLAALKYWG  120
TLTVTNFPVS EYEEQVEIMQ TMTKEEYLAT LRSIPNISLG ALSQPLFCDF FLSYRKSSGF  180
SRGASKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSKL NHHSPSQGYK SSRHRQNRFK  240
ICFSHFINLS EHLVNQIYVP FPNIGTQEEA ARAYDIAAIE YRGSHAITNF DLSTYMRWLK  300
SSAGNISETK LEKLEVPESQ TVASRSNYSQ IEGSKSLALH NSTYNSNYLN SPQKFEVFDN  360
NISSTKSSSS PTALGILFRS TIFRELVEKN SNISRDETEG EDTKDQQPQM ASGVNDELDG  420
IFYDGTGLSP Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1929RRKFISMADDDFQVIGKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450943.10.0AP2 domain transcription factor
SwissprotQ6X5Y67e-67WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A072U7A00.0A0A072U7A0_MEDTR; AP2 domain transcription factor
STRINGGLYMA18G49101.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.19e-67AP2 family protein