PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 210aa    MW: 23009.9 Da    PI: 10.7357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39930genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-2071120255
                        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GVr ++ +grW AeIrd +   g r r++lg+f+taeeAa+a++aa+++l+g
  Tp57577_TGAC_v2_mRNA39930  71 NYRGVRKRP-WGRWSAEIRDrV---G-RCRHWLGTFDTAEEAARAYDAAARRLRG 120
                                59*******.**********55...2.59************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.74E-1670129No hitNo description
SMARTSM003801.3E-3271134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2971128IPR001471AP2/ERF domain
PfamPF008473.7E-1471120IPR001471AP2/ERF domain
PROSITE profilePS5103222.72171128IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2271129IPR016177DNA-binding domain
PRINTSPR003677.2E-117283IPR001471AP2/ERF domain
PRINTSPR003677.2E-1194110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMNIENFSHD PTPTTTTTTL NIPKHNPLQQ TSLEGIAAIV GEQILYGPHN SKTTQPTCVS  60
HLKTKTEPKK NYRGVRKRPW GRWSAEIRDR VGRCRHWLGT FDTAEEAARA YDAAARRLRG  120
SKARTNFKIP FVLPLPLSSN SNHSNESCSS SNGNGKKKVV RNSVKKCCVV NSVGELFSGV  180
PEVRRERDYG NNNGSVGFGG GRNSAGMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1870129161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604308.25e-77ethylene-responsive transcription factor ERF084
SwissprotQ9M8M52e-26ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A2K3LIF21e-122A0A2K3LIF2_TRIPR; Ethylene-responsive transcription factor erf084-like protein
STRINGAES865051e-64(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-27ERF family protein