PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 645aa    MW: 72414.4 Da    PI: 7.0157
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3822genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2378.2e-12290359155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..........kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  ++  g          ++   k   lg ++ +e+Aa+a+++a++k++g
  Tp57577_TGAC_v2_mRNA3822 290 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsrkgrqgknVTihsKILILGGYDMEEKAARAYDQAALKYWG 359
                               78*******************9888833456688886611568*************************98 PP

2AP236.11.7e-11417462755
                       AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA3822 417 YRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 462
                               78999*******988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-17290367No hitNo description
SuperFamilySSF541713.33E-13290369IPR016177DNA-binding domain
PfamPF008471.2E-8290359IPR001471AP2/ERF domain
PROSITE profilePS5103216.726291367IPR001471AP2/ERF domain
SMARTSM003809.5E-23291373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-14291368IPR001471AP2/ERF domain
PRINTSPR003675.5E-5292303IPR001471AP2/ERF domain
PRINTSPR003675.5E-5349369IPR001471AP2/ERF domain
CDDcd000185.87E-23402472No hitNo description
SMARTSM003804.1E-27403476IPR001471AP2/ERF domain
PROSITE profilePS5103218.479403470IPR001471AP2/ERF domain
PfamPF008471.7E-6417462IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14418470IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-16418470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MKSMMENDDE SVDINNENNW LGFSLSPQMN NQSQHSSSSS ASEIVPLSSS FYNSTPLSNY  60
CFSYGLEHEN NVGLYSLLPI MPLKSDGSLY EMPPQTQAMT PKLENFLGNE AMETPHYACT  120
STTVTETMPL SLDSMFQNQV QHMNNQQQLS YYDLMLEGSK QNQNSSGNFH VSNLGEDNGL  180
SGLKNWVLRN FPASHGHDNS KMIVPVVVDE NVGESCSNIG SMAYGDLHSL SLSMSPSSQS  240
SCVTTSQNMS SAVIDNNSVA IDTKKRGNEK IEQKQIVHRK SIDTFGQRTS QYRGVTRHRW  300
TGRYEAHLWD NSCKKEGQSR KGRQGKNVTI HSKILILGGY DMEEKAARAY DQAALKYWGP  360
STHINFPLEN YQNQLEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRS YRLLITYRHH  420
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGANAVTNFD IVKYDVEKIM  480
ASSNLLSIEF ARRNKEVVDT TQHIDQNKPN SSAYDNNTQE AILMQKNMVL YQSSQQQNQP  540
RIENERTHQS FSSVSFDNMF HQEVVEEASK MRTHVSNASS LATSLSSSRE GSPDRTSLQN  600
LSGIMPSTAS KLLVTNAPNS NVNSWDPSLH LRTQMPVFAA WTDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608564.20.0AP2-like ethylene-responsive transcription factor
SwissprotQ389141e-145ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLG7JF920.0G7JF92_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA05G22970.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-121AP2 family protein