PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38206
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 495aa    MW: 54868.5 Da    PI: 6.6762
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38206genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.7e-11151207155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d+   g       k  +   f+ta  Aa+a+++a+ k++g
  Tp57577_TGAC_v2_mRNA38206 151 SQYRGVTFYRRTGRWESHIWDC---GkqvyLGeKATQHRGFDTAHAAARAYDRAAIKFRG 207
                                78*******************5...22322114555555699999************997 PP

2AP240.28.6e-13250300155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ +Aa+a+++a+ k +g
  Tp57577_TGAC_v2_mRNA38206 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIDAARAYDKAAIKCNG 300
                                89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-12151217IPR016177DNA-binding domain
PfamPF008473.6E-5151207IPR001471AP2/ERF domain
PROSITE profilePS5103214.895152215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-13152216IPR001471AP2/ERF domain
SMARTSM003805.3E-28152221IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-16250309IPR016177DNA-binding domain
CDDcd000185.25E-25250310No hitNo description
PfamPF008473.9E-8250300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15251309IPR001471AP2/ERF domain
SMARTSM003805.9E-31251314IPR001471AP2/ERF domain
PROSITE profilePS5103215.343251308IPR001471AP2/ERF domain
PRINTSPR003675.1E-6252263IPR001471AP2/ERF domain
PRINTSPR003675.1E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MLDLNLNAHS AFDNYTFPLS SATAQMESSG SFDSSVINTA DTEDSSSYGD AYAYNFAILN  60
NNTNNNSSVE NGSISGELQV QHSGAGESGV RTIQLFPANE SGLISPSENR GWMKMNFPSD  120
HHGGVPEHTV VVAPRPQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGE  180
KATQHRGFDT AHAAARAYDR AAIKFRGVDA DINFNVSDYD EDIKQMSNFT KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEIDAARA YDKAAIKCNG  300
REAVTNFEAS TYEGELISHC DNADSKQNLD LNLAIAPPSN SDVQMMNMQH NGSGLQVQRS  360
WDDMPVDKSV MFEDSGSRSV NVQSPYGFSI ASENQPPVWS GSNYFPMCKE RAIENRMESS  420
PVPNWAWQLQ SPYNNGSTLI PPNFSAAASS GFPSNTTIPS AADSQIHFAN MNFHPHFPPQ  480
MTNSSTIPPF YCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102912e-48AP010291.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT58D09, TM2058, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625570.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AMA91e-102AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2K3PDQ40.0A0A2K3PDQ4_TRIPR; Ethylene-responsive transcription factor rap2-7-like protein
STRINGAES817880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-101related to AP2.7