PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 104aa    MW: 11453.8 Da    PI: 10.5806
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37951genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.2e-075780123
                        AP2  1 sgykGVrwdkkrgrWvAeIrd.ps 23
                               s y+GV++++++gr++A+++d  +
  Tp57577_TGAC_v2_mRNA37951 57 SIYRGVTRHRWTGRYEAHLWDnSC 80
                               57******************9332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-45782IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MKVTRSGNEF AYSAAAVKAV NGALSLAVAR SSEENAIVVA DSDSSKKIAD TFGQRTSIYR  60
GVTRHRWTGR YEAHLWDNSC RREGQARKGR QGYFLSLHIF VTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613030.15e-41AP2-like ethylene-responsive transcription factor
SwissprotQ52QU22e-30AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLG7JWC75e-41G7JWC7_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA09G33241.16e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2551822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.29e-32AINTEGUMENTA-like 6