PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37663
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 63aa    MW: 6855.02 Da    PI: 8.789
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37663genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.35.2e-14461153
                     DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee 53
                               +C++C+ lr++C++dC++ p++     p++q +++ +++k++G++ +l+ll+++ +++
  Tp57577_TGAC_v2_mRNA37663  4 SCNGCRALRKGCSEDCIIKPCLewigsPEAQGHATLFLAKFYGRTGLLNLLANATNQK 61
                               6***************************************************998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.892363IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-11461IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MKLSCNGCRA LRKGCSEDCI IKPCLEWIGS PEAQGHATLF LAKFYGRTGL LNLLANATNQ  60
KAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470179.14e-34LOB domain protein
SwissprotQ9M8863e-27LBD41_ARATH; LOB domain-containing protein 41
TrEMBLG7ZZB85e-34G7ZZB8_MEDTR; LOB domain protein
STRINGMLOC_58304.15e-26(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2023345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-25LOB domain-containing protein 41