PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36988
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 143aa    MW: 16581.9 Da    PI: 9.6566
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36988genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1161.9e-3658142283
                      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                                l +fwe+q   ie++ dfk + lPlari+ki+k+de+v+mis+e+Pvl++kac +fi elt++sw   eenkr+tl+ksdi++a
  Tp57577_TGAC_v2_mRNA36988  58 LDTFWENQnheIEETVDFKANCLPLARIRKIMKTDEKVSMISSETPVLFAKACKMFITELTMQSWAIVEENKRKTLQKSDISSA 141
                                789****99999**********************************************************************99 PP

                      NF-YC  83 v 83 
                                +
  Tp57577_TGAC_v2_mRNA36988 142 I 142
                                8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.86E-2551142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-3171143IPR009072Histone-fold
PfamPF008085.1E-2080142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
KQENDIPTQT HNENQKKTNQ IAQLSRPLIH TAGTSAFSSY LSREHFQQRK QQALQRKLDT  60
FWENQNHEIE ETVDFKANCL PLARIRKIMK TDEKVSMISS ETPVLFAKAC KMFITELTMQ  120
SWAIVEENKR KTLQKSDISS AIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-295814319105HapE
4g92_C3e-295814319105HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462829.12e-47core histone H2A/H2B/H3/H4
SwissprotQ8LCG73e-36NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
SwissprotQ8L4B28e-36NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLI3TAY73e-47I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGGLYMA08G15700.14e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.46e-37nuclear factor Y, subunit C9