PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 423aa    MW: 47770.5 Da    PI: 5.6652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36955genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2401e-1265121155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  s+n+ ++k+   g ++t+e Aa+ ++ a++k++g
  Tp57577_TGAC_v2_mRNA36955  65 SIYRGVTRHRWTGRFEAHLWDkSSWNNiQSKKGKQGAYDTEEAAARTYDLAALKYWG 121
                                57*******************7777**97755555********************98 PP

2AP251.23e-16164215155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV +++ +grW+A+I  ++    +k+ +lg++ t eeAa a+++a+ +++g
  Tp57577_TGAC_v2_mRNA36955 164 SKYRGVARHHHNGRWEARIGRVCG---NKYLYLGTYKTQEEAAVAYDKAAIEYRG 215
                                89****99***********99644...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-965121IPR001471AP2/ERF domain
CDDcd000183.88E-1965130No hitNo description
SuperFamilySSF541714.12E-1565131IPR016177DNA-binding domain
PROSITE profilePS5103219.08566129IPR001471AP2/ERF domain
SMARTSM003801.0E-2066135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-1366129IPR001471AP2/ERF domain
PRINTSPR003673.3E-66778IPR001471AP2/ERF domain
PfamPF008476.7E-11164215IPR001471AP2/ERF domain
CDDcd000182.40E-24164225No hitNo description
SuperFamilySSF541711.37E-17164225IPR016177DNA-binding domain
SMARTSM003801.3E-26165229IPR001471AP2/ERF domain
PROSITE profilePS5103217.991165223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-18165223IPR001471AP2/ERF domain
PRINTSPR003673.3E-6205225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
LRLQMKRSPP SSSSSSSSSI GFENPIQSEK KRGAKSKNPK NNLNLKSQNF KQKKNQTNGG  60
SRRSSIYRGV TRHRWTGRFE AHLWDKSSWN NIQSKKGKQG AYDTEEAAAR TYDLAALKYW  120
GKDATLNFPI ETYAKEFEEM DKSSKEEYLA SLRRQSSGFS RGISKYRGVA RHHHNGRWEA  180
RIGRVCGNKY LYLGTYKTQE EAAVAYDKAA IEYRGMNAVT NFDISNYMDK SKNKKNDETE  240
QTEQQQTITE IVPNNSSDSE ELSEEQTTAT PPTEMEPQNQ QVQQHQQHVS PQHASPIVHE  300
EHTIVNVMDH YFDQDWSCMY NGLLEFQDTN MDFNKGGEDL IDIFDGSGFV EDIGLMFNTE  360
EPYGGVESDI NISEVLKGID CGGLLNGDVG NMFVNDDDNK KEKELLSLES SSPSSSTTTF  420
SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628132.20.0AP2 domain transcription factor
SwissprotQ6X5Y61e-100WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLG7L7000.0G7L700_MEDTR; AP2 domain transcription factor
STRINGGLYMA15G34770.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98593241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-99AP2 family protein