PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 376aa    MW: 42424.3 Da    PI: 9.6267
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36911genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-16126174154
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                                s+++GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+  ++
  Tp57577_TGAC_v2_mRNA36911 126 SQFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVMFR 174
                                789******************......55*********************97766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-15126183IPR016177DNA-binding domain
PROSITE profilePS5103216.687127183IPR001471AP2/ERF domain
PfamPF008475.0E-8127173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-16127183IPR001471AP2/ERF domain
SMARTSM003802.9E-30127189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSMLDLNVDI IHVDDYSTNV QKGLQLQTFP HEISDSRTSN SSVSNPTDEY SSNNSFPFNF  60
DLLKKENDVS ETITRTLFPV SADGGGRLCD SNSINQRLNF DDQNGHRTLQ QKQPRKSRRG  120
PRSRSSQFRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA VMFRGVDADI  180
NFILSDYEED LKQMRGLSKE EFIQRLRRQT NGNSRRSSTY RSILPLHKYG QEDPPYVAKT  240
FCHKSHMKET SFKASTTYKG EIIANSNKLH HLDLSLRISP SSKQLDNNNS GVGFSSACTT  300
YMIPQERGTM EMALLNIKKE VPLQQVLAWQ FCSNGRRIAL GSLQSNAAAS SGFVSTLSPI  360
NSHTISSLSQ PQYYR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467318.11e-165AP2 domain transcription factor
TrEMBLA0A072VTF31e-165A0A072VTF3_MEDTR; AP2 domain transcription factor
STRINGGLYMA10G22390.21e-125(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-42related to AP2.7