PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 103aa    MW: 11088 Da    PI: 9.2349
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36846genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.43.1e-113882144
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlk 44
                               +C  Ck+l+rkC+++C++a yf  +q   +fa+vhk+  + +v++
  Tp57577_TGAC_v2_mRNA36846 38 PCGDCKFLKRKCTRECIFALYFGTDQgVGSFAAVHKVKTRVEVVH 82
                               7***********************99779*******977776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.73237102IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-93881IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MVESRGGDGS SGTRRRICAN GAKRAMARVT QEVLITVPCG DCKFLKRKCT RECIFALYFG  60
TDQGVGSFAA VHKVKTRVEV VHVHEVVGGS MSCWHMLAAL LC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489657.11e-25PREDICTED: LOB domain-containing protein 20 isoform X1
RefseqXP_012568165.11e-25PREDICTED: LOB domain-containing protein 20 isoform X1
RefseqXP_012568167.19e-26PREDICTED: LOB domain-containing protein 20 isoform X2
TrEMBLA0A0B2PE622e-18A0A0B2PE62_GLYSO; LOB domain-containing protein 20
STRINGGLYMA19G30200.24e-15(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-11LOB domain-containing protein 20