PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 101aa    MW: 10757 Da    PI: 10.2978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36840genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.32.6e-193886148
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllka 48
                               +C aCk+lrrkC+ +C++apyf  +q +++f +vhk+FGasnv+kll+ 
  Tp57577_TGAC_v2_mRNA36840 38 PCGACKFLRRKCSGGCIFAPYFGRDQgAARFVAVHKVFGASNVSKLLSX 86
                               7***********************9989******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.91637100IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-183886IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MAESQRGDGS SRNTCNKDTN AAKRAMTGAT RDESVVPPCG ACKFLRRKCS GGCIFAPYFG  60
RDQGAARFVA VHKVFGASNV SKLLSXXXXX XXXXXXXXPP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568167.14e-37PREDICTED: LOB domain-containing protein 20 isoform X2
RefseqXP_004489657.15e-37PREDICTED: LOB domain-containing protein 20 isoform X1
RefseqXP_012568165.15e-37PREDICTED: LOB domain-containing protein 20 isoform X1
SwissprotQ9SRV32e-25LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0B2PE627e-29A0A0B2PE62_GLYSO; LOB domain-containing protein 20
TrEMBLK7MY041e-28K7MY04_SOYBN; Uncharacterized protein
STRINGGLYMA19G30200.23e-28(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-26LOB domain-containing protein 20