PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 265aa    MW: 29610 Da    PI: 6.9867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3610genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.98.4e-39371371100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC ++Cv+apyf +eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lq
  Tp57577_TGAC_v2_mRNA3610  37 PCGACKFLRRKCIRGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQ 121
                               7*************************89********************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               qq+ +l+++la+lke+
  Tp57577_TGAC_v2_mRNA3610 122 QQVVNLQTQLAYLKEQ 137
                               ************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.31936138IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-3737135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKSIREQENK PLKPQIQRKI INQSIKMAGS SSVSGSPCGA CKFLRRKCIR GCVFAPYFSH  60
EQGATHFAAI HKVFGASNVS KLLAHLPVSD RCEAAVTISY EAQARLQDPI YGCVSHIFAL  120
QQQVVNLQTQ LAYLKEQASQ TCVNNASTNE NPNEKSTTLT PLQDLQSLFH VETSNSHQLR  180
QEFHTNNLSN ISSTTQYYVN NNNLMDLNPM SNYENSRGVI EENSSFSSFE ESTSTSMSYD  240
MQTNRRTWGF DEVEDLHSVA FGYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468530.11e-131lateral organ boundaries (LOB) domain protein
SwissprotQ9M2J72e-71LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A072VL561e-131A0A072VL56_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA13G18210.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.15e-62lateral organ boundaries-domain 29