PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 320aa    MW: 36326 Da    PI: 6.7091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35111genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-1976124355
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Tp57577_TGAC_v2_mRNA35111  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 124
                                9*******.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-3875138IPR001471AP2/ERF domain
PROSITE profilePS5103223.80275132IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2275133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3275133IPR001471AP2/ERF domain
PRINTSPR003678.5E-127687IPR001471AP2/ERF domain
PfamPF008479.4E-1276124IPR001471AP2/ERF domain
CDDcd000189.25E-3476133No hitNo description
PRINTSPR003678.5E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCGGAIIAXX PLNSGLTHSV NKLTPLPQTL IFLILLINNH HHHPLLSKDH ILSKAFYRTV  60
NERVEKPVKK QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDKEAR  120
KIRGKKAKVN FPNEDDEYSI QANRRPPQPI RPPNHALYHQ QQHHQQQYPK NLNLEFGYDL  180
NQADTIQNSH VGSMNTEPFI ISGSGGSGGD ENSVYGSGSG SEIGYSVIEF NDGSNPNETG  240
YFCGVVNERE KEKEKLQVQE TQHAVEADEA AKNEVQELSD ELMAYEDYMK FYQIPYYDGQ  300
SMPPNIVQEH VVGDLWSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1527511e-103AC152751.22 Medicago truncatula clone mth2-18n7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591474.11e-132ethylene-responsive transcription factor RAP2-12
TrEMBLA0A2K3LIJ30.0A0A2K3LIJ3_TRIPR; Ethylene-responsive transcription factor rap2-12-like protein (Fragment)
STRINGAES617251e-131(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-35ERF family protein