PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34763

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 308aa MW: 33746.9 Da PI: 8.68

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34763	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Tp57577_TGAC_v2_mRNA34763 39 KDQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 99 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	35	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.7E-34	40	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDTAQWAQGN IGLVKQMDGS TSNSKPPASL IERRARPQKD QAINCPRCNS TNTKFCYYNN 60 YSLSQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSTS SSSSSPSISQ SQPHQSQPIS 120 SSITKNIIIN PDLTTSTHNH NFPQSASQNP KIHQGQDLNL AYPPQTNEDS YNNTISKFIE 180 LPYSTEQDKT TSAMELLKTA SSSRGLNSFM PMTLSEGSAM YNSSGFALQD FKLGVNFGLE 240 GFENGYGGLQ GINQEGXXXX AAQQQQVPNG GGEFDHQHHH HQQQQNNRNQ GGDASGYWNG 300 MLGGGSW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003602283.2	1e-159	Dof-type zinc finger DNA-binding family protein
TrEMBL	G7J7H3	1e-159	G7J7H3_MEDTR; Dof-type zinc finger DNA-binding family protein
STRING	GLYMA04G41170.1	1e-109	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	3e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34763