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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Dof | ||||||||
Protein Properties | Length: 308aa MW: 33746.9 Da PI: 8.68 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.2e-39 | 39 | 99 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Tp57577_TGAC_v2_mRNA34763 39 KDQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 99 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 35 | 97 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.7E-34 | 40 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.106 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDTAQWAQGN IGLVKQMDGS TSNSKPPASL IERRARPQKD QAINCPRCNS TNTKFCYYNN 60 YSLSQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSTS SSSSSPSISQ SQPHQSQPIS 120 SSITKNIIIN PDLTTSTHNH NFPQSASQNP KIHQGQDLNL AYPPQTNEDS YNNTISKFIE 180 LPYSTEQDKT TSAMELLKTA SSSRGLNSFM PMTLSEGSAM YNSSGFALQD FKLGVNFGLE 240 GFENGYGGLQ GINQEGXXXX AAQQQQVPNG GGEFDHQHHH HQQQQNNRNQ GGDASGYWNG 300 MLGGGSW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602283.2 | 1e-159 | Dof-type zinc finger DNA-binding family protein | ||||
TrEMBL | G7J7H3 | 1e-159 | G7J7H3_MEDTR; Dof-type zinc finger DNA-binding family protein | ||||
STRING | GLYMA04G41170.1 | 1e-109 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 3e-45 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34763 |