PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 197aa    MW: 22430.8 Da    PI: 9.8604
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34383genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.2e-0864124155
                        AP2   1 sgykGVrw....dkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+++GV++    ++++gr++A+++d  ++n   k+k  + g +  +e Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA34383  64 SKFRGVSRhvliHRWTGRYEAHLWDkGTWNPtqKKKGKQ-GAYNDEEAAARAYDLAALKYWG 124
                                68899965222268999999*****77777785557777.666666**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-464124IPR001471AP2/ERF domain
PROSITE profilePS5103216.55565132IPR001471AP2/ERF domain
SMARTSM003805.6E-1165138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1065132IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1266133IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MELALVKNEL SPRSHRLLML EADSVVTTKC VKRRRRDSSI AQQGDVSEMQ QPLSGQATTV  60
KRSSKFRGVS RHVLIHRWTG RYEAHLWDKG TWNPTQKKKG KQGAYNDEEA AARAYDLAAL  120
KYWGTSTFTN FPVCNFLVSD YEKEIEIMIT MSKEEYLASL RRVLKKIDIF PSYISFSFVI  180
IGGAVVFLEV FQNIEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101PTQKKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445793.13e-79AP2-like ethylene-responsive transcription factor
SwissprotQ6X5Y63e-36WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A072TQP33e-79A0A072TQP3_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA08G40831.18e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.16e-30AP2 family protein