PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34329
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 205aa    MW: 22902.9 Da    PI: 5.5775
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34329genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC160.72.1e-50371392101
                      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                                l++fwe+q   ie++td+knh+lP +rikki+kadedvkmisaeaPvl++kace+fi eltlrsw+++een+rrtlkk++iaaa
  Tp57577_TGAC_v2_mRNA34329  37 LQVFWENQiqeIENVTDIKNHSLPPTRIKKIMKADEDVKMISAEAPVLFAKACEMFISELTLRSWNNTEENNRRTLKKNNIAAA 120
                                99*****988899*********************************************************************** PP

                      NF-YC  83 vtrtdifdflvdivprdel 101
                                ++ td++dflvdivpr++l
  Tp57577_TGAC_v2_mRNA34329 121 IATTDTYDFLVDIVPREDL 139
                                ****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.37E-2930130IPR009072Histone-fold
PfamPF008083.0E-2058121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.9E-3559136IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDHQGNNQNA QMGVVGSGGQ MPYGSNTVQS NKLQQKLQVF WENQIQEIEN VTDIKNHSLP  60
PTRIKKIMKA DEDVKMISAE APVLFAKACE MFISELTLRS WNNTEENNRR TLKKNNIAAA  120
IATTDTYDFL VDIVPREDLK NEVLASIPRG TMHVGGPSDA LPYCYNAPQQ PVMDPNMHAE  180
QPHPFMAPPM WPQPSDQRPP SPDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B2e-3743136297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114RRTLKKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626304.11e-106nuclear transcription factor Y protein
SwissprotQ8L4B29e-67NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLG7KYQ41e-106G7KYQ4_MEDTR; Nuclear transcription factor Y protein
TrEMBLI3TAX91e-107I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
STRINGGLYMA19G42460.12e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.46e-61nuclear factor Y, subunit C9