PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34276
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 245aa    MW: 27419.9 Da    PI: 5.0797
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34276genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.22.7e-54791821101
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql++fwe+q   +ek+td+knh+lPlarikki+kadedv+misaeaP+l++kacelfi eltlrsw+h+eenkrrtl+k+diaa
  Tp57577_TGAC_v2_mRNA34276  79 QLQAFWENQtqeMEKVTDIKNHSLPLARIKKIMKADEDVRMISAEAPILFAKACELFISELTLRSWNHTEENKRRTLQKNDIAA 162
                                89*****99999************************************************************************ PP

                      NF-YC  82 avtrtdifdflvdivprdel 101
                                a+trtd++dflvdivprd+l
  Tp57577_TGAC_v2_mRNA34276 163 AITRTDVYDFLVDIVPRDDL 182
                                ******************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.21E-3331173IPR009072Histone-fold
PfamPF008081.2E-22101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.2E-38102179IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDHEGNNQNP QMEVVGSGGQ MPYGSNTYQS NQMTGATGSV DMSVRGMQST GQPAGPQLGQ  60
HELAYQHILQ RQQQQLQQQL QAFWENQTQE MEKVTDIKNH SLPLARIKKI MKADEDVRMI  120
SAEAPILFAK ACELFISELT LRSWNHTEEN KRRTLQKNDI AAAITRTDVY DFLVDIVPRD  180
DLKDEVLASI PRGTMSVGGP ADALPYCYMP PQQPVTDPNM QPHPFMAPPM WPQPSDQRPP  240
SPDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B8e-41941791297NF-YC
4awl_C7e-4194179994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B7e-4194179994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4g91_C8e-418017919119HapE
4g92_C8e-418017919119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626304.11e-142nuclear transcription factor Y protein
SwissprotQ8L4B28e-78NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLG7KYQ41e-142G7KYQ4_MEDTR; Nuclear transcription factor Y protein
TrEMBLI3TAX91e-143I3TAX9_MEDTR; Nuclear transcription factor Y subunit C2
STRINGGLYMA19G42460.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-78nuclear factor Y, subunit C9