PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34184
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 150aa    MW: 17047.9 Da    PI: 5.1218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34184genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-192070255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                               +y+GVr+++ +g+++AeIrdp     k +r++lg+f taeeAa+a+++a+ +++g
  Tp57577_TGAC_v2_mRNA34184 20 RYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFLTAEEAARAYDRAAFEMRG 70
                               59*******.**********8...4445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.33E-312079No hitNo description
PfamPF008473.4E-142070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-322080IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-242080IPR016177DNA-binding domain
SMARTSM003801.3E-362084IPR001471AP2/ERF domain
PROSITE profilePS5103224.7772078IPR001471AP2/ERF domain
PRINTSPR003672.3E-112132IPR001471AP2/ERF domain
PRINTSPR003672.3E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEEEISKEKN DKQESPKEIR YRGVRRRPWG KYAAEIRDPA RKGTRVWLGT FLTAEEAARA  60
YDRAAFEMRG SLAILNFPHE YPFLNSSSSS SSLAPNPHLS SSSESLLPSN YQNEHGKEVI  120
EFECLDDKLL EELLDCDESE TTTHKNLPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-322012914114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34184
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468509.19e-61ethylene-responsive transcription factor ERF098
SwissprotQ9LTC53e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K3PQ831e-105A0A2K3PQ83_TRIPR; Ethylene-responsive transcription factor erf098-like protein
STRINGXP_004292207.15e-46(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.13e-25ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]