PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32549
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 196aa    MW: 22722.1 Da    PI: 4.6499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32549genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.92.3e-37101291128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r         +nr+t++gyW 
  Tp57577_TGAC_v2_mRNA32549  10 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRT--------QNRMTNNGYWM 84 
                                79*************************999.99***************77778899******984........589******** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  g +++vl++ +++ vg+kk  vf+ g+ap+g+kt+W+m+eyrl
  Tp57577_TGAC_v2_mRNA32549  85 PMGMEEQVLTSsSNKRVGMKKYYVFHIGEAPDGNKTNWIMQEYRL 129
                                ********99867778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-486159IPR003441NAC domain
PROSITE profilePS5100545.84710161IPR003441NAC domain
PfamPF023651.9E-2211129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDHNNNVNL PPGFRFYPTD EELVVHFLHR KASLLPCHPD VIPDLDLYPF DPWQLQGRAL  60
EEGNQWYYYS RRTQNRMTNN GYWMPMGMEE QVLTSSSNKR VGMKKYYVFH IGEAPDGNKT  120
NWIMQEYRLS DSASSSTRSS SSKRKSKSEH SRWVICRVYE HDEDDDDQDG DGTELSCLDE  180
VFLSLEDLDE VSLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-41316010164NO APICAL MERISTEM PROTEIN
1ut4_B2e-41316010164NO APICAL MERISTEM PROTEIN
1ut7_A2e-41316010164NO APICAL MERISTEM PROTEIN
1ut7_B2e-41316010164NO APICAL MERISTEM PROTEIN
3swm_A2e-41316113168NAC domain-containing protein 19
3swm_B2e-41316113168NAC domain-containing protein 19
3swm_C2e-41316113168NAC domain-containing protein 19
3swm_D2e-41316113168NAC domain-containing protein 19
3swp_A2e-41316113168NAC domain-containing protein 19
3swp_B2e-41316113168NAC domain-containing protein 19
3swp_C2e-41316113168NAC domain-containing protein 19
3swp_D2e-41316113168NAC domain-containing protein 19
4dul_A2e-41316010164NAC domain-containing protein 19
4dul_B2e-41316010164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32549
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457220.11e-111NAC domain-containing protein 104
SwissprotQ8GWK61e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2K3PI011e-145A0A2K3PI01_TRIPR; NAC domain-containing protein
STRINGGLYMA08G08010.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-76xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]