PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31932
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 202aa    MW: 22713 Da    PI: 10.2019
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31932genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.61.2e-211968255
                        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               +y+GVr+++ +g+W+AeIrdp+   k +r++lg+f+tae+Aa+a+++a+ k++g
  Tp57577_TGAC_v2_mRNA31932 19 HYRGVRQRP-WGKWAAEIRDPN---KGARVWLGTFDTAEGAARAYDEAAIKFKG 68
                               8********.**********93...25***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-331876No hitNo description
Gene3DG3DSA:3.30.730.104.9E-341877IPR001471AP2/ERF domain
PROSITE profilePS5103224.9481976IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-231977IPR016177DNA-binding domain
SMARTSM003807.5E-421982IPR001471AP2/ERF domain
PfamPF008476.5E-151968IPR001471AP2/ERF domain
PRINTSPR003675.9E-122031IPR001471AP2/ERF domain
PRINTSPR003675.9E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEKQEPSQPT NQGNEKKKHY RGVRQRPWGK WAAEIRDPNK GARVWLGTFD TAEGAARAYD  60
EAAIKFKGNK AKTNFPQPVS HSPSNPSPPR KNNTASSSSS QFAPPKSHFP LSTTEEVFPN  120
LMQYAQVLCS KDDEDLRRAA SSLYNNSFHH HNNNNNEQFR YYNLPPFFST PSTMSPSSTS  180
NDVVPRVGDR RGFDERNVRG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-251679266ATERF1
3gcc_A2e-251679266ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31932
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451611.15e-81ethylene-responsive transcription factor ERF113
TrEMBLA0A2K3LSV91e-132A0A2K3LSV9_TRIPR; Ethylene-responsive transcription factor erf113-like protein
STRINGXP_004515403.18e-68(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-26related to AP2 6l