PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 169aa    MW: 19547.5 Da    PI: 5.7399
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31715genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC144.42.6e-45451462100
                      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                                l +fwe+q   ie++ dfk + lPlari+ki+kade+v+mis+e+Pvl++kace+fi elt++sw   eenkr+tl+ksdi++a
  Tp57577_TGAC_v2_mRNA31715  45 LDTFWENQnheIEETVDFKANCLPLARIRKIMKADEKVSMISSETPVLFAKACEMFITELTMQSWAILEENKRKTLQKSDISSA 128
                                789****99999************************************************************************ PP

                      NF-YC  83 vtrtdifdflvdivprde 100
                                ++r d+fdflvdivpr++
  Tp57577_TGAC_v2_mRNA31715 129 ISRNDMFDFLVDIVPREN 146
                                ***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.09E-288138IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.0E-3567144IPR009072Histone-fold
PfamPF008082.5E-2067129IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDQKKQENDI PTQTHNENQN KSNQIAQLSX XXXXXXXXXX LQRKLDTFWE NQNHEIEETV  60
DFKANCLPLA RIRKIMKADE KVSMISSETP VLFAKACEMF ITELTMQSWA ILEENKRKTL  120
QKSDISSAIS RNDMFDFLVD IVPRENTLEH NIFMNIPRRG SAPFANVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C5e-404514419119HapE
4g91_C5e-404514419119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462829.18e-56core histone H2A/H2B/H3/H4
SwissprotQ8L4B23e-49NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLI3TAY79e-56I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGPOPTR_0010s03730.12e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.42e-50nuclear factor Y, subunit C9