PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 273aa    MW: 30160.6 Da    PI: 9.8318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31610genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-14153193347
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                                y GVr ++ +g+++AeIr p++   + r++lg+f taeeAa a++
  Tp57577_TGAC_v2_mRNA31610 153 YLGVRKRP-WGKYAAEIRNPYT---KERHWLGTFNTAEEAAIAYD 193
                                77******.**********865...5******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-25152216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-24152210IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17152211IPR016177DNA-binding domain
PROSITE profilePS5103219.44152210IPR001471AP2/ERF domain
PRINTSPR003671.5E-8153164IPR001471AP2/ERF domain
CDDcd000183.35E-24153209No hitNo description
PfamPF008473.0E-7154193IPR001471AP2/ERF domain
PRINTSPR003671.5E-8175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
LFTSRILFFI GIVNMNTAPN VWYNSTKYRL VFNLVYSHKK KSPFNTHHNT TQHHHPQSKS  60
KMNGVFSEIV QMLLLVVLLK ILVYLVCSML PVKAGPPEAA NGGPIASTAS GGGGGKNPYS  120
QNTKSNNPME NITPTPLIYK NPIRRTSRRS TMYLGVRKRP WGKYAAEIRN PYTKERHWLG  180
TFNTAEEAAI AYDFSSINIC GIDNARTNFH YPFVSHSQPP LSLLLPAPPQ PTQVLDAICM  240
LEMNVGFDGG DDESLVIASI LQTFSNSGSC SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469561.13e-69ethylene-responsive transcription factor LEP
TrEMBLA0A072VNJ77e-68A0A072VNJ7_MEDTR; DNA-binding domain protein
STRINGXP_007143615.14e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-24ERF family protein