PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 670aa    MW: 73533 Da    PI: 7.1723
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31232genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12328384155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a+++a++k++g
  Tp57577_TGAC_v2_mRNA31232 328 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 384
                                78*******************77776664346655.77******************98 PP

2AP245.81.6e-14429478355
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA31232 429 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 478
                                9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.07E-19328392No hitNo description
PfamPF008471.3E-9328384IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-14328394IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-13329393IPR001471AP2/ERF domain
PROSITE profilePS5103217.069329392IPR001471AP2/ERF domain
SMARTSM003809.8E-22329398IPR001471AP2/ERF domain
PRINTSPR003671.1E-6330341IPR001471AP2/ERF domain
CDDcd000188.62E-26427488No hitNo description
SuperFamilySSF541715.89E-18427488IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-19428486IPR001471AP2/ERF domain
SMARTSM003801.1E-34428492IPR001471AP2/ERF domain
PROSITE profilePS5103219.335428486IPR001471AP2/ERF domain
PfamPF008476.4E-10429478IPR001471AP2/ERF domain
PRINTSPR003671.1E-6468488IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKSMNDSSSN SDDRNNNNNW LGFSLSPHIK IGDELSSSPL HNHYQQPSSA SNTVPTSFYF  60
SPSHFTNSAI CYGVPENANF HSPLTVMPLK SDGSLCIMEA LGRSQSQVMV SSSSSPKLED  120
FLGGATMGTH DEYVSHEREA MALSLDSIYY NGQQNADPHQ ANRDHSLELL SESFRQQTSS  180
HPYYAALGYH GMFQTPLEVV VESKENTNHV DVCSSQMPQN WVSSREYSSS ASLTLEQQMN  240
NGGAGSGAAD GGGGGSVGTV GCGELQSLSL SMSPGSQSSC VTAPSQISPT GTESVTMSMD  300
AKKRGAAKLG QKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG  360
RQGGYDMEEK AARAYDQAAL KYWGPSTHIN FPLENYQIQL EEMKNMTRQE YVAHLRRKSS  420
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGSN  480
AVTNFDISKY DVERIMASNT LLSGEHARRI KDNVPLIEYN NDTNVSSQNI GEAAQVRNNN  540
ENDSKWKMVS NSCDQKNAVN SSGSYKNSDF SMCLQDLVAG QQHVLDDSNK IGTHFSNPSS  600
LVTSLSSSRE ASPDHKTGPS LLFPKLPMES KIATNGVSSW FPSQVTNQMR PTSSINLSHF  660
PVFAAWNDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461815.10.0AP2-like ethylene-responsive transcription factor
SwissprotQ389141e-161ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A072VCJ10.0A0A072VCJ1_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA04G05080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein