PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 173aa    MW: 19458.5 Da    PI: 8.1271
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31188genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.52.3e-43381371100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +Ca+Ck+lrr+CakdC+++pyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar++dPvyG+vg i+ lq
  Tp57577_TGAC_v2_mRNA31188  38 PCASCKLLRRRCAKDCIFSPYFPSNDPQKFAIVHKVFGASNVSKMLQELPIQQRSDAVSSLVYEAHARVKDPVYGCVGAISYLQ 121
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                +q++ l+ +la++++e
  Tp57577_TGAC_v2_mRNA31188 122 NQVSDLQMQLAVAQAE 137
                                ***********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.55937138IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-4338135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
LDYKYRLSHF TTPILLLFVS SPVSSVFHYQ MGGNTNSPCA SCKLLRRRCA KDCIFSPYFP  60
SNDPQKFAIV HKVFGASNVS KMLQELPIQQ RSDAVSSLVY EAHARVKDPV YGCVGAISYL  120
QNQVSDLQMQ LAVAQAEILC LQMQHEPVMQ NPDIALDHKY QTLFTLFTLF TF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR3786628e-67CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600972.12e-81lateral organ boundaries (LOB) domain protein
SwissprotQ8LBW32e-73LBD12_ARATH; LOB domain-containing protein 12
TrEMBLG7J2B82e-81G7J2B8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA14G06140.14e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.18e-74LBD family protein