PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30899
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 259aa    MW: 28826.6 Da    PI: 9.9584
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30899genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57366.27.1e-2146129596
                     DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                                r++se De+++L+G+ df +ktgk+ps++id f++fvk+s+ + v+++q+  Kir L++K++            +f k+hd+k+
  Tp57577_TGAC_v2_mRNA30899  46 RIFSEGDELAILRGVADFLSKTGKDPSKNIDSFHDFVKNSLGAMVTNQQIKRKIRGLREKYESGD---------NFIKPHDKKA 120
                                9************************************************************8643.........47999***** PP

                     DUF573  89 felskki.W 96 
                                +el kki W
  Tp57577_TGAC_v2_mRNA30899 121 LELFKKIkW 129
                                999999855 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-1846127IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAPRKRLLIN NPPSVTTTTS ESSDDDKNDY IQLPCKETVS AAAGGRIFSE GDELAILRGV  60
ADFLSKTGKD PSKNIDSFHD FVKNSLGAMV TNQQIKRKIR GLREKYESGD NFIKPHDKKA  120
LELFKKIKWG NNGGNVAGEE NGKAVDVKSP KKDVNVKVKH VGSSSKNVGS GVDNNFILNE  180
IFRSRDAKGL PLNKDDGKRL NKDDGEKRLE MIGESRRAEM VHQWRQLHVA ELEVFVNRAQ  240
LVKDHTSYLL EELTKSTH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3NIQ11e-158A0A2K3NIQ1_TRIPR; Mediator-associated protein 1-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-15DNA-binding storekeeper protein-related transcriptional regulator