PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3076
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 203aa    MW: 22198.2 Da    PI: 5.1902
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3076genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601315e-41331331100
                    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +CaaCk+lrr+C+++ Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da++s+vyeA ar+rdPvyG++g i +lq
  Tp57577_TGAC_v2_mRNA3076  33 PCAACKILRRRCSAEkCVLAPYFPPNDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGAICQLQ 117
                               7***********9766********************************************************************* PP

                    DUF260  85 qqleqlkaelallkee 100
                               +q+++l+a+la+ ++e
  Tp57577_TGAC_v2_mRNA3076 118 KQVNELQAQLAKSQAE 133
                               ***********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.69732134IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-4133131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MESIISDSSS PTSSSNSLQL IAQVPSQVVV MSPCAACKIL RRRCSAEKCV LAPYFPPNDP  60
AKFTIAHRVF GASNIIKFLQ ELPEAQRADA VTSMVYEASA RVRDPVYGCA GAICQLQKQV  120
NELQAQLAKS QAEVVNMQLQ QANLVALICM EMSQSPQESP QQISLDNNNF IQSPNHNSGH  180
QIGLNFFDEN TSLNSLWEPL WT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492685e-93AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606493.11e-110lateral organ boundaries (LOB) domain protein
SwissprotQ9LQR03e-75LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK086e-75LBD11_ARATH; LOB domain-containing protein 11
TrEMBLG7JRG81e-110G7JRG8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA11G15810.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-73LOB domain-containing protein 1