PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30621
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 244aa    MW: 28049.6 Da    PI: 6.4027
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30621genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC144.13.2e-45621632100
                      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                                l +fwe+q   ie++ dfk + lPlari+ki+kade+v+mis+e+Pvl++kac++fi elt+rsw   eenkr+tl+ksdi++a
  Tp57577_TGAC_v2_mRNA30621  62 LDTFWENQnheIEETVDFKANCLPLARIRKIMKADEKVSMISSETPVLFAKACQMFITELTMRSWAIVEENKRKTLQKSDISSA 145
                                789****99999************************************************************************ PP

                      NF-YC  83 vtrtdifdflvdivprde 100
                                ++r d+fdflvdivpr++
  Tp57577_TGAC_v2_mRNA30621 146 ISRNDMFDFLVDIVPREN 163
                                ***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.89E-2941155IPR009072Histone-fold
PfamPF008088.1E-2084146IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-3484161IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDQKKQENDI PTQTHNENQN KSNQIAQLSR PLIHTAGTSA FSSYLSREHF QQRKQQALQR  60
KLDTFWENQN HEIEETVDFK ANCLPLARIR KIMKADEKVS MISSETPVLF AKACQMFITE  120
LTMRSWAIVE ENKRKTLQKS DISSAISRND MFDFLVDIVP RENTLEHNIF MNIPRRGSAP  180
FANVPYYDVL VPMPMPSQDA AGPSYGSPRY DQPQYKRQLN HPLVLPTPKQ EDEHSSDLPD  240
SDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-396216119119HapE
4g92_C5e-396216119119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462829.12e-84core histone H2A/H2B/H3/H4
SwissprotQ8L4B26e-49NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLI3TAY72e-84I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGPOPTR_0008s20780.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-50nuclear factor Y, subunit C9