PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 212aa    MW: 23911 Da    PI: 9.8283
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30071genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.8e-1863113255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +ykGVr+++ +g+++AeIrdp++ng  +r++l ++ t+eeAa a+ +a+ k++g
  Tp57577_TGAC_v2_mRNA30071  63 RYKGVRRRP-WGKFAAEIRDPKKNG--ARVWLRTYLTEEEAALAYNKAAFKMRG 113
                                8********.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.47E-2862123No hitNo description
SMARTSM003804.2E-3363127IPR001471AP2/ERF domain
PfamPF008471.7E-1163113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2863122IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2063122IPR016177DNA-binding domain
PROSITE profilePS5103222.68263121IPR001471AP2/ERF domain
PRINTSPR003677.6E-126475IPR001471AP2/ERF domain
PRINTSPR003677.6E-12103123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MASTTKDSDF AYLEHIQQYL LFDDYSLLTT STDDQSLPSP KSDNDSDTIL KAREISAPPT  60
WKRYKGVRRR PWGKFAAEIR DPKKNGARVW LRTYLTEEEA ALAYNKAAFK MRGQKAKLNF  120
PHLIGSDVLT SKSKRDVVLK RKSPEPSSSE GSCESTSPGS KRRRGMVDLL NKLAKNKSQA  180
MVVEIEKASQ ANDDFQQWVN ELNDCTLIWS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2662121160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2662126468ATERF1
3gcc_A2e-2662126468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30071
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492940.11e-106ethylene-responsive transcription factor 1-like
SwissprotQ404763e-36ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A2K3M8K91e-152A0A2K3M8K9_TRIPR; Ethylene-responsive transcription factor 2-like protein
STRINGXP_004492940.11e-106(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-34ethylene-responsive element binding factor 13