PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29912
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 223aa    MW: 24831.2 Da    PI: 6.9482
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29912genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1762112256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr +  +g++v+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Tp57577_TGAC_v2_mRNA29912  62 TYRGVRMRN-WGKFVCEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 112
                                69****998.**********854...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-3462125IPR001471AP2/ERF domain
PfamPF008472.4E-1262112IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2162120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3162120IPR001471AP2/ERF domain
PROSITE profilePS5103222.20762119IPR001471AP2/ERF domain
PRINTSPR003678.2E-106374IPR001471AP2/ERF domain
CDDcd000189.02E-3163121No hitNo description
PRINTSPR003678.2E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEKHINIEES DANENFATSS TTSSTSSNSD TSTRHDTKAS PKDCKKRKRN SESDENNSKH  60
PTYRGVRMRN WGKFVCEIRE PKKKSRIWLG TYPTAEMAAR AHDVAALAIK GHSAYLNFPE  120
LAKALPKPIS TSPKDIQAAA AKAANNTSFE AHQLEPRQEH QHDSSSSSTF TNDDATLFDL  180
PDLFPDDGNN GLCSYSSKNS SWYLCSVDSG FRLEEPSFWE KY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1757119972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29912
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445918e-40AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626728.13e-97ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-60ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K3NJ351e-164A0A2K3NJ35_TRIPR; Ethylene-responsive transcription factor erf034-like protein
STRINGAET012041e-96(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]