PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29174
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 266aa    MW: 30557.4 Da    PI: 9.6352
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29174genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.82.2e-1691179296
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkk..sisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 
                                ++ r++seeD++v+L+Gl df +kt k+p ++  +f+ f+++  s  ++  +sq+  Kir LK+Kf+k++          f+  
  Tp57577_TGAC_v2_mRNA29174  91 KSGRVFSEEDDLVILRGLADFISKTRKDPLKNAAEFHYFMREekSFRSDLRNSQIKRKIRTLKDKFEKRR---------IFTVL 165
                                6789************************************97115566899***************8654.........47889 PP

                     DUF573  84 hdqkifels.kkiW 96 
                                hd+k+f+l  k+iW
  Tp57577_TGAC_v2_mRNA29174 166 HDKKAFKLFnKIIW 179
                                99999998615567 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-1394177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASKNHYVQL PSESQKPVAD SEPNPQPQSR SSAQAQTSLT SGKKRDVEDK NANGNTSKRL  60
KKKKETVFAA AGGGSGEEKN DCMEEKKSKK KSGRVFSEED DLVILRGLAD FISKTRKDPL  120
KNAAEFHYFM REEKSFRSDL RNSQIKRKIR TLKDKFEKRR IFTVLHDKKA FKLFNKIIWT  180
NNDENEAAEE NQNEVESSLG YILNEIFRCD VDMALDWNDA KKGLESTEES SRAEMEEKWR  240
KLHIEEMNLV VTQTQYAKDR VRLGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14263KKRDVEDKNANGNTSKRLKKKK
25864RLKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LT840.0A0A2K3LT84_TRIPR; Mediator-associated protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-11DNA-binding storekeeper protein-related transcriptional regulator