PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28759
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 232aa    MW: 26626.7 Da    PI: 7.7601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28759genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20153203255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp+++g   r++lg+f ta eAaka+++a+ kl+g
  Tp57577_TGAC_v2_mRNA28759 153 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETAIEAAKAYDRAAFKLRG 203
                                69*******.**********96655..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.22E-32152211No hitNo description
SMARTSM003809.0E-39153217IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22153213IPR016177DNA-binding domain
PROSITE profilePS5103224.197153211IPR001471AP2/ERF domain
PfamPF008472.1E-14153203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-33153212IPR001471AP2/ERF domain
PRINTSPR003678.3E-14154165IPR001471AP2/ERF domain
PRINTSPR003678.3E-14193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MANYEEVSAL KRIKLHLLGE FSPLPSPISQ PSLNFDFDFD FQFQTEQIQS QSESESKSIN  60
SDSSISLDHY LNDLFQIETQ IPVFEFDSKP QLIETESPQP LISQRTVEKK PQLNRKPSLK  120
VDLPKKTTEW IQFGKPEPKP EVVVKAEVVE KQHYRGVRQR PWGKFAAEIR DPNKRGSRVW  180
LGTFETAIEA AKAYDRAAFK LRGSKAILNF PLEVNAXXXX XXXXXXXXXX W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33152216468ATERF1
3gcc_A3e-33152216468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28759
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608660.21e-98ethylene-responsive transcription factor 6
SwissprotO803411e-50EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A2K3MA251e-152A0A2K3MA25_TRIPR; Ethylene-responsive transcription factor 5-like protein
STRINGAES908574e-98(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.19e-47ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]