PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 578aa    MW: 65338.6 Da    PI: 7.038
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28420genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.17e-16305356155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Tp57577_TGAC_v2_mRNA28420 305 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 356
                                89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-13167272No hitNo description
Gene3DG3DSA:3.30.730.108.6E-9168190IPR001471AP2/ERF domain
PROSITE profilePS5103213.973168270IPR001471AP2/ERF domain
SMARTSM003805.3E-16168276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-9230271IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-6238272IPR016177DNA-binding domain
PfamPF008472.5E-10305356IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-18305365IPR016177DNA-binding domain
CDDcd000181.16E-25305364No hitNo description
Gene3DG3DSA:3.30.730.102.7E-18306364IPR001471AP2/ERF domain
PROSITE profilePS5103219.467306364IPR001471AP2/ERF domain
SMARTSM003801.4E-33306370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MNNNWLSFPL SPSHPSLPSN DLQATQYHHF PLGLVNEHIE NPFQNHDWNL MNTHSSNEVP  60
KVADFLGVHK SENHSDLVAQ NEIQSNDSDS YLFTNNNNTF MAMQNQVVTT CTNEYQEKVS  120
NSNLQSLTLS MGSGKDSTCE TSGDTSANTL EVAAPKRTSE TFGQRTSIYR GVTKHRWTGR  180
YEAHLWDNSC RREGQSRKGR QEIVYYFKVS VSLIVIFVHL IFCTFCGEIK YKILWFYLMA  240
GGYDKEEKAA KSYDLAALKY WGTSTTTNFP VSNYEKEIDE MKHMTRQEFV ASIRRNSSGF  300
SRGASKYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA AIKFRGLNAV  360
TNFDMTRYDV KAILESNTLP IGGGAAKRLK EAQALETSRK REEMLALNSS SFQYGTTSSS  420
SNNRLQPYPL MHYHHQFEQQ QQLPQPLLTL QNNHENISHD QFSQQQQHHQ GGGYFQTQLE  480
LQQQQNNQTS QYYNGYFQNH PGLFQMNNMG SSSSSSSVMG NNVGGGGSSG IYSNSGGLIG  540
NNGVDEEFVX XXXXXXXXXX XXXXXXXXXX XXXXXNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606758.20.0AP2-like ethylene-responsive transcription factor
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLG7JCJ40.0G7JCJ4_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGGLYMA12G06010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-165AP2 family protein