PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28172
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 147aa    MW: 15867.1 Da    PI: 9.1149
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28172genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.61.8e-3722116194
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+++C++apyf+ eq + +fa++hk+FGasnv+k+l ++p ++r++a+ +++yeA+ar+ dPvyG+v++i++l
  Tp57577_TGAC_v2_mRNA28172  22 PCGACKFLRRKCTSECIFAPYFCCEQgSIRFAAIHKVFGASNVSKMLLNIPAHDRPEAVVTIAYEAQARIIDPVYGCVSHIFAL 105
                                7*********************9999789******************************************************* PP

                     DUF260  84 qqqleqlkael 94 
                                qqq++  + +l
  Tp57577_TGAC_v2_mRNA28172 106 QQQVHFQSYNL 116
                                ****9877666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.41221123IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-3622116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MASANGSGSG SGSGSGSGSG SPCGACKFLR RKCTSECIFA PYFCCEQGSI RFAAIHKVFG  60
ASNVSKMLLN IPAHDRPEAV VTIAYEAQAR IIDPVYGCVS HIFALQQQVH FQSYNLQFNT  120
SYRTFINTIR NSFLGHSKSK STLLIKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493763.12e-57PREDICTED: LOB domain-containing protein 16 isoform X1
SwissprotQ9SLB75e-58LBD16_ARATH; LOB domain-containing protein 16
TrEMBLI1JP224e-57I1JP22_SOYBN; Uncharacterized protein
STRINGGLYMA03G31830.11e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-54lateral organ boundaries-domain 16